Eugenia Galeota

Post Doc
PostDoc

Research Lines

Genomic Science

Center

cgs-semm

Contacts

Via Adamello 16

About

Education

2013: PhD “Cellular and Molecular Biology”. University of Rome Tor Vergata, Advisor G. Cesareni.

2008: MSComputer Science”. University of Salerno, Advisor P. Cicalese

2005: BS “Computer Science”. University of Salerno.

Working experience

2013 Postdoctoral Research Associate. Ospedale San Raffaele, Milano.

2009-2010 Predoctoral Research Associate. University of Rome Tor Vergata, Advisor G. Cesareni.

Projects

Current research activities

  1. Semantic annotation of public data repositories to for the representation and analysis of large-scale epigenomics, transcriptional and regulatory NGS data


Past Research activities

·       Analysis of protein-protein interaction networks and the dynamics of complex formation in self-organizing virtual cells.

·       Data analysis of public datasets to understand the involvment of the immune system in cancer.

Selected Publications

Article: The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells.
Eugenia Galeota, Caius Gravila, Filippo Castiglione, Massimo Bernaschi, Gianni Cesareni
 
 
BMC Systems Biology 01/2015; 9 Suppl 3:S3. DOI:10.1186/1752-0509-9-S3-S3 · 2.85 Impact Factor

Article: The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.


Sandra Orchard, Mais Ammari, Bruno Aranda, Lionel Breuza, Leonardo Briganti, Fiona Broackes-Carter, Nancy H Campbell, Gayatri Chavali, Carol Chen, Noemi Del-Toro, Margaret Duesbury, Marine Dumousseau, Eugenia Galeota, Ursula Hinz, Marta Iannuccelli, Sruthi Jagannathan, Rafael Jimenez, Jyoti Khadake ,Astrid Lagreid, Luana Licata, Ruth C Lovering, Birgit Meldal , Anna N Melidoni , Mila Milagros , Daniele Peluso,Livia Perfetto, Pablo Porras, Arathi Raghunath, Sylvie Ricard-Blum, Bernd Roechert, Andre Stutz, Michael Tognolli, Kim van Roey, Gianni Cesareni, Henning Hermjakob

Nucleic Acids Research 11/2013

Article:
A new reference implementation of the PSICQUIC web service.

Noemi Del-Toro, Marine Dumousseau, Sandra Orchard, Rafael C Jimenez, Eugenia Galeota, Guillaume Launay, Johannes Goll, Karin Breuer, Keiichiro Ono, Lukasz Salwinski, Henning Hermjakob

Nucleic Acids Research 05/2013

Article: MINT, the molecular interaction database: 2012 update.

Luana Licata, Leonardo Briganti, Daniele Peluso, Livia Perfetto, Marta Iannuccelli, Eugenia Galeota, Francesca Sacco, Anita Palma, Aurelio Pio Nardozza, Elena Santonico, Luisa Castagnoli, Gianni Cesareni

Nucleic Acids Research 11/2011

Article: PSICQUIC and PSISCORE: accessing and scoring molecular interactions

Bruno Aranda, Hagen Blankenburg, Samuel Kerrien, Fiona S L Brinkman, Arnaud Ceol, Emilie Chautard, Jose M Dana, Javier De Las Rivas, Marine Dumousseau, Eugenia Galeota, Anna Gaulton, Johannes Goll, Robert E W Hancock, Ruth Isserlin, Rafael C Jimenez, Jules Kerssemakers, Jyoti Khadake, David J Lynn, Magali Michaut, Gavin O'Kelly, Keiichiro Ono, Sandra Orchard, Carlos Prieto, Sabry Razick, Olga Rigina, Lukasz Salwinski, Milan Simonovic, Sameer Velankar, Andrew Winter, Guanming Wu, Gary D Bader, Gianni Cesareni, Ian M DonaldsonWalter Quattrociocchi, Frederic Amblard, Eugenia Galeota, David Eisenberg, Gerard J Kleywegt, John Overington, Sylvie Ricard-Blum, Mike Tyers, Mario Albrecht & Henning Hermjakob

Nature Methods 06/2011; 8(7):528-529.

Article: Selection in scientific networks
 
Walter Quattrociocchi, Frederic Amblard, Eugenia Galeota

Social Network Analysis and Mining.

IIT Publications

  • 2017
  • Galeota E.iit, Pelizzola M.iit
    DOI

    Ontology-based annotations and semantic relations in large-scale (epi)genomics data

    Briefings in Bioinformatics, vol. 18, (no. 3), pp. 403-412
  • 2016
  • Bianchi V.iit, Ceol A.iit, Ogier A.G.E., De Pretis S.iit, Galeota E.iit, Kishore K.iit, Bora P.iit, Croci O.iit, Campaner S.iit, Amati B.iit, Morelli M.J.iit, Pelizzola M.iit
    DOI

    Integrated systems for NGS data management and analysis: Open issues and available solutions

    Frontiers in Genetics, vol. 7, (no. MAY)
  • 2015
  • Galeota E., Gravila C., Castiglione F., Bernaschi M., Cesareni G.
    DOI

    The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells

    BMC Systems Biology, vol. 9, (no. 3)
  • 2014
  • Orchard S., Ammari M., Aranda B., Breuza L., Briganti L., Broackes-Carter F., Campbell N.H., Chavali G., Chen C., Del-Toro N., Duesbury M., Dumousseau M., Galeota E., Hinz U., Iannuccelli M., Jagannathan S., Jimenez R., Khadake J., Lagreid A., Licata L., Lovering R.C., Meldal B., Melidoni A.N., Milagros M., Peluso D., Perfetto L., Porras P., Raghunath A., Ricard-Blum S., Roechert B., Stutz A., Tognolli M., Van Roey K., Cesareni G., Hermjakob H.
    DOI

    The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases

    Nucleic Acids Research, vol. 42, (no. D1)
  • 2013
  • del-Toro N., Dumousseau M., Orchard S., Jimenez R.C., Galeota E., Launay G., Goll J., Breuer K., Ono K., Salwinski L., Hermjakob H.
    DOI

    A new reference implementation of the PSICQUIC web service.

    Nucleic Acids Research, vol. 41, (no. Web Server issue)
  • 2012
  • Licata L., Briganti L., Peluso D., Perfetto L., Iannuccelli M., Galeota E., Sacco F., Palma A., Nardozza A.P., Santonico E., Castagnoli L., Cesareni G.
    DOI

    MINT, the molecular interaction database: 2012 Update

    Nucleic Acids Research, vol. 40, (no. D1)
  • Quattrociocchi W., Amblard F., Galeota E.
    DOI

    Selection in scientific networks

    Social Network Analysis and Mining, vol. 2, (no. 3), pp. 229-237
  • 2011
  • Aranda B., Blankenburg H., Kerrien S., Brinkman F.S.L., Ceol A., Chautard E., Dana J.M., De Las Rivas J., Dumousseau M., Galeota E., Gaulton A., Goll J., Hancock R.E.W., Isserlin R., Jimenez R.C., Kerssemakers J., Khadake J., Lynn D.J., Michaut M., O'Kelly G., Ono K., Orchard S., Prieto C., Razick S., Rigina O., Salwinski L., Simonovic M., Velankar S., Winter A., Wu G., Bader G.D., Cesareni G., Donaldson I.M., Eisenberg D., Kleywegt G.J., Overington J., Ricard-Blum S., Tyers M., Albrecht M., Hermjakob H.
    DOI

    PSICQUIC and PSISCORE: Accessing and scoring molecular interactions

    Nature Methods, vol. 8, (no. 7), pp. 528-529